[1] |
SANGER H L, KLOTZ G, RIESNER D, et al. Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rodlike structures[J]. Proc Natl Acad Sci USA, 1976, 73: 3852-3856.
|
[2] |
GUO J U, AGARWAL V, GUO H,et al. Expanded identification and characterization of mammalian circular RNAs[J]. Genome Biology, 2014, 15(7): Article number 409.
|
[3] |
LASDA E, PARKER R. Circular RNAs: Diversity of form and function[J]. RNA, 2014, 20(12):1829-1842.
|
[4] |
DU W W, ZHANG C, YANG W,et al. Identifying and characterizing circRNA-protein interaction[J]. Theranostics, 2017, 7(17): 4183-4191.
|
[5] |
HOLDT L M, KOHLMAIER A, TEUPSER D. Molecular roles and function of circular RNAs in eukaryotic cells[J]. Cellular and Molecular Life Sciences, 2018, 75(6): 1071-1098.
|
[6] |
LI F, ZHANG L, LI W, et al. Circular RNA ITCH has inhibitory effect on ESCC by suppressing the Wnt/β-catenin pathway[J]. Oncotarget, 2015, 6: 6001-13.
|
[7] |
ASHWAL-FLUSS R, MEYER M, PAMUDURTI N R, et al. circRNA biogenesis competes with pre-mRNA splicing[J]. Mol Cell, 2014, 56: 55-66.
|
[8] |
CHEN Y, LI C, TAN C,et al. Circular RNAs: A new frontier in the study of human diseases[J]. Journal of Medical Genetics, 2016, 53(6): 359-365.
|
[9] |
TAKEMATA N, SAMSON R Y, BELL S D. Physical and functional compartmentalization of archaeal chromosomes[J]. Cell, 2019, 179(1):165-179.
|
[10] |
DANAN M, SCHWARTZ S, EDELHEIT S, et al. Transcriptome-wide discovery of circular RNAs in Archaea[J]. Nucleic Acids Res, 2011, 40: 3131-3142.
|
[11] |
LYKKE-ANDERSEN J, AAGAARD C, SEMIONENKOV M, et al. Archaeal introns: Splicing, intercellular mobility and evolution[J]. Trends Biochem Sci, 1997, 22: 326-331.
|
[12] |
SINGH S K, GURHA P, TRAN E J, et al. Sequential 2’-O-methylation of archaeal pre-tRNATrp nucleotides is guided by the intron-encoded but trans-acting box C/D ribonucleoprotein of pre-tRNA[J]. J Biol Chem, 2004, 279: 47661-47671.
|
[13] |
CLOUET D’ORVAL B, BORTOLIN M L, GASPIN C, et al. Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp[J].Nucleic Acids Res, 2001, 29: 4518-4529.
|
[14] |
SALGIA S R, SINGH S K, GURHA P, et al. Two reactions of Haloferax volcanii RNA splicing enzymes: Joining of exons and circularization of introns[J]. RNA, 2003, 9: 319-330.
|
[15] |
TANG T H, ROZHDESTVENSKY T S, D’ORVAL B C, et al. RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing[J]. Nucleic Acids Res, 2002, 30: 921-930.
|
[16] |
MIAO Di. Construction of a novel shuttle expression vector based on haloarchaeal plasmid pSCM201 and studies on replicon of minichromosome pHM300[D]. Beijing: Institute of Microbiology, Chinese Academy of Sciences, 2009.
|
[17] |
MEMCZAK S, JENS M, ELEFSINIOTI A, et al. Circular RNAs are a large class of animal RNAs with regulatory potency[J].Nature, 2013, 495(7441): 333-338
|
[18] |
LI Z, HUANG C, BAO C,et al. Exon-intron circular RNAs regulate transcription in the nucleus[J]. Nat Struct Mol Biol, 2015, 22: 256-264.
|
[19] |
SUZUKI H, ZUO Y, WANG J, et al. Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing[J]. Nucleic Acids Res, 2006, 34: e63.
|
[20] |
MEMCZAK S, JENS M, ELEFSINIOTI A,et al. Circular RNAs are a large class of animal RNAs with regulatory potency[J]. Nature, 2013, 495: 333-338.
|
[21] |
CONN S J, PILLMAN K A, TOUBIA J, et al. The RNA binding protein quaking regulates formation of circRNAs[J]. Cell, 2015, 160: 1125-1134.
|
[22] |
SOTA M, TOP E M. Horizontal gene transfer mediated by plasmids[C]// Plasmids: Current Research and Future Trends. Poole, UK: Caister Academic Press, 2008.
|
[23] |
HUANG C, LIANG D, TATOMER D C, et al. A length-depengdent evolutionarily conserved pathway controls nuclear export of circular RNAs[J]. Genes Dev, 2018, 32: 639-644.
|
[24] |
WANY, HOPPER A K. Size matters: Conserved proteins function in length-dependent nuclear export of circular RNAs[J]. Genes Dev, 2018, 32: 600-601.
|
[25] |
BARRETT S P,WANG P L, SALZMAN J. Circular RNA biogenesis can proceed through an exon-containing lariat precursor[J]. eLife, 2015, 4: e07540.
|
[26] |
METGE F, CZAJA-HASSE L F, REINHARDT R, et al. FUCHS-towards full circular RNA characterization using RNAsEq[J]. PeerJ, 2017, 5: e2934.
|
[27] |
GLAZAR P, PAPAVASILEIOU P, RAJEWSKY N. circBase: A database for circular RNAs[J]. RNA, 2014, 20:1666-1670.
|
[28] |
MEMCZAK S, JENS M, ELEFSINIOTI A, et al. Circular RNAs are a large class of animal RNAs with regulatory potency[J]. Nature, 2013, 495: 333-338.
|
[29] |
RYBAK-WOLF A, STOTTMEISTER C, GLAZAR P, et al. Circular RNAs in the mammalian brain are highly abundant, conserved, and dynamically expressed[J]. Mol Cell,2015, 58: 870-885.
|
[30] |
SALZMAN J, CHEN R E, OLSEN M N, et al. Cell-type specific features of circular RNA expression[J]. PLoS Genet, 2013, 9: e1003777.
|
[31] |
IVANOV A, MEMCZAK S, WYLER E, et al. Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals[J]. Cell Rep, 2015, 10:170-177.
|
[32] |
SHEN Y, GUO X, WANG W. Identification and characterization of circular RNAs in zebrafish[J]. FEBS Lett, 2017, 591: 213-220.
|
[33] |
HOUSELEY J M, GARCIA-CASADO Z, PASCUAL M, et al. Noncanonical RNAs from transcripts of the Drosophila muscleblind gene[J]. J Hered, 2006, 97: 253-260.
|
[34] |
WANG P L, BAO Y, YEE M C, et al. Circular RNA is expressed across the eukaryotic tree of life[J]. PLoS One, 2014, 9: e90859.
|
[35] |
JECK W R, SORRENTINO J A, WANG K, et al. Circular RNAs are abundant, conserved, and associated with ALU repeats[J]. RNA , 2013, 19: 141-157.
|
[36] |
WESTHOLM J O, MIURA P, OLSON S, et al. Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation[J]. Cell Rep, 2014, 9: 1966-1980.
|
[37] |
YOU X, VLATKOVIC I, BABIC A, et al. Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity[J]. Nat Neurosci, 2015, 18: 603-610.
|
[38] |
CLOUET D’ORVAL B, BORTOLIN M L, GASPIN C, et al. Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp[J]. Nucleic Acids Res, 2001, 29(22): 4518-4529.)
|
[1] |
SANGER H L, KLOTZ G, RIESNER D, et al. Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rodlike structures[J]. Proc Natl Acad Sci USA, 1976, 73: 3852-3856.
|
[2] |
GUO J U, AGARWAL V, GUO H,et al. Expanded identification and characterization of mammalian circular RNAs[J]. Genome Biology, 2014, 15(7): Article number 409.
|
[3] |
LASDA E, PARKER R. Circular RNAs: Diversity of form and function[J]. RNA, 2014, 20(12):1829-1842.
|
[4] |
DU W W, ZHANG C, YANG W,et al. Identifying and characterizing circRNA-protein interaction[J]. Theranostics, 2017, 7(17): 4183-4191.
|
[5] |
HOLDT L M, KOHLMAIER A, TEUPSER D. Molecular roles and function of circular RNAs in eukaryotic cells[J]. Cellular and Molecular Life Sciences, 2018, 75(6): 1071-1098.
|
[6] |
LI F, ZHANG L, LI W, et al. Circular RNA ITCH has inhibitory effect on ESCC by suppressing the Wnt/β-catenin pathway[J]. Oncotarget, 2015, 6: 6001-13.
|
[7] |
ASHWAL-FLUSS R, MEYER M, PAMUDURTI N R, et al. circRNA biogenesis competes with pre-mRNA splicing[J]. Mol Cell, 2014, 56: 55-66.
|
[8] |
CHEN Y, LI C, TAN C,et al. Circular RNAs: A new frontier in the study of human diseases[J]. Journal of Medical Genetics, 2016, 53(6): 359-365.
|
[9] |
TAKEMATA N, SAMSON R Y, BELL S D. Physical and functional compartmentalization of archaeal chromosomes[J]. Cell, 2019, 179(1):165-179.
|
[10] |
DANAN M, SCHWARTZ S, EDELHEIT S, et al. Transcriptome-wide discovery of circular RNAs in Archaea[J]. Nucleic Acids Res, 2011, 40: 3131-3142.
|
[11] |
LYKKE-ANDERSEN J, AAGAARD C, SEMIONENKOV M, et al. Archaeal introns: Splicing, intercellular mobility and evolution[J]. Trends Biochem Sci, 1997, 22: 326-331.
|
[12] |
SINGH S K, GURHA P, TRAN E J, et al. Sequential 2’-O-methylation of archaeal pre-tRNATrp nucleotides is guided by the intron-encoded but trans-acting box C/D ribonucleoprotein of pre-tRNA[J]. J Biol Chem, 2004, 279: 47661-47671.
|
[13] |
CLOUET D’ORVAL B, BORTOLIN M L, GASPIN C, et al. Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp[J].Nucleic Acids Res, 2001, 29: 4518-4529.
|
[14] |
SALGIA S R, SINGH S K, GURHA P, et al. Two reactions of Haloferax volcanii RNA splicing enzymes: Joining of exons and circularization of introns[J]. RNA, 2003, 9: 319-330.
|
[15] |
TANG T H, ROZHDESTVENSKY T S, D’ORVAL B C, et al. RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing[J]. Nucleic Acids Res, 2002, 30: 921-930.
|
[16] |
MIAO Di. Construction of a novel shuttle expression vector based on haloarchaeal plasmid pSCM201 and studies on replicon of minichromosome pHM300[D]. Beijing: Institute of Microbiology, Chinese Academy of Sciences, 2009.
|
[17] |
MEMCZAK S, JENS M, ELEFSINIOTI A, et al. Circular RNAs are a large class of animal RNAs with regulatory potency[J].Nature, 2013, 495(7441): 333-338
|
[18] |
LI Z, HUANG C, BAO C,et al. Exon-intron circular RNAs regulate transcription in the nucleus[J]. Nat Struct Mol Biol, 2015, 22: 256-264.
|
[19] |
SUZUKI H, ZUO Y, WANG J, et al. Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing[J]. Nucleic Acids Res, 2006, 34: e63.
|
[20] |
MEMCZAK S, JENS M, ELEFSINIOTI A,et al. Circular RNAs are a large class of animal RNAs with regulatory potency[J]. Nature, 2013, 495: 333-338.
|
[21] |
CONN S J, PILLMAN K A, TOUBIA J, et al. The RNA binding protein quaking regulates formation of circRNAs[J]. Cell, 2015, 160: 1125-1134.
|
[22] |
SOTA M, TOP E M. Horizontal gene transfer mediated by plasmids[C]// Plasmids: Current Research and Future Trends. Poole, UK: Caister Academic Press, 2008.
|
[23] |
HUANG C, LIANG D, TATOMER D C, et al. A length-depengdent evolutionarily conserved pathway controls nuclear export of circular RNAs[J]. Genes Dev, 2018, 32: 639-644.
|
[24] |
WANY, HOPPER A K. Size matters: Conserved proteins function in length-dependent nuclear export of circular RNAs[J]. Genes Dev, 2018, 32: 600-601.
|
[25] |
BARRETT S P,WANG P L, SALZMAN J. Circular RNA biogenesis can proceed through an exon-containing lariat precursor[J]. eLife, 2015, 4: e07540.
|
[26] |
METGE F, CZAJA-HASSE L F, REINHARDT R, et al. FUCHS-towards full circular RNA characterization using RNAsEq[J]. PeerJ, 2017, 5: e2934.
|
[27] |
GLAZAR P, PAPAVASILEIOU P, RAJEWSKY N. circBase: A database for circular RNAs[J]. RNA, 2014, 20:1666-1670.
|
[28] |
MEMCZAK S, JENS M, ELEFSINIOTI A, et al. Circular RNAs are a large class of animal RNAs with regulatory potency[J]. Nature, 2013, 495: 333-338.
|
[29] |
RYBAK-WOLF A, STOTTMEISTER C, GLAZAR P, et al. Circular RNAs in the mammalian brain are highly abundant, conserved, and dynamically expressed[J]. Mol Cell,2015, 58: 870-885.
|
[30] |
SALZMAN J, CHEN R E, OLSEN M N, et al. Cell-type specific features of circular RNA expression[J]. PLoS Genet, 2013, 9: e1003777.
|
[31] |
IVANOV A, MEMCZAK S, WYLER E, et al. Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals[J]. Cell Rep, 2015, 10:170-177.
|
[32] |
SHEN Y, GUO X, WANG W. Identification and characterization of circular RNAs in zebrafish[J]. FEBS Lett, 2017, 591: 213-220.
|
[33] |
HOUSELEY J M, GARCIA-CASADO Z, PASCUAL M, et al. Noncanonical RNAs from transcripts of the Drosophila muscleblind gene[J]. J Hered, 2006, 97: 253-260.
|
[34] |
WANG P L, BAO Y, YEE M C, et al. Circular RNA is expressed across the eukaryotic tree of life[J]. PLoS One, 2014, 9: e90859.
|
[35] |
JECK W R, SORRENTINO J A, WANG K, et al. Circular RNAs are abundant, conserved, and associated with ALU repeats[J]. RNA , 2013, 19: 141-157.
|
[36] |
WESTHOLM J O, MIURA P, OLSON S, et al. Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation[J]. Cell Rep, 2014, 9: 1966-1980.
|
[37] |
YOU X, VLATKOVIC I, BABIC A, et al. Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity[J]. Nat Neurosci, 2015, 18: 603-610.
|
[38] |
CLOUET D’ORVAL B, BORTOLIN M L, GASPIN C, et al. Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp[J]. Nucleic Acids Res, 2001, 29(22): 4518-4529.)
|